17q12 recurrent (RCAD syndrome) region (includes HNF1B)

  • 3
    Haplo
    Score
  • 3
    Triplo
    Score

Region Facts

Region Name
17q12 recurrent (RCAD syndrome) region (includes HNF1B)
Cytoband
17q12
Genomic Coordinates
GRCh37/hg19 chr17:34815072-36192489 NCBI Ensembl UCSC
GRCh38/hg38 chr17:36458167-37854616 NCBI Ensembl UCSC

Dosage Sensitivity Summary (Region)

Dosage ID:
ISCA-37432
Curation Status:
Complete
Issue Type:
Dosage Curation - Region
Description:
This review refers to the 17q12 recurrent region (includes HNF1B). Note that genes used as landmarks are not necessarily causative of the phenotype(s) associated with the region.
Haploinsufficiency:
Sufficient Evidence for Haploinsufficiency (3)
Triplosensitivity:
Sufficient Evidence for Triplosensitivity (3)
Related Links:
Last Evaluated:
06/16/2022

Haploinsufficiency (HI) Score Details

HI Score:
3
HI Evidence Strength:
Sufficient Evidence for Haploinsufficiency (Disclaimer)
HI Disease:
  • chromosome 17q12 deletion syndrome Monarch
HI Evidence:
HI Evidence Comments:
Deletion of the 17q12 region is associated with a variable clinical phenotype that includes renal cysts and diabetes (RCAD) syndrome. Clinical findings include abnormalities of the kidneys, urinary tract, liver, pancreas and eyes, maturity-onset diabetes of the young type 5 (MODY5), developmental delay/intellectual disability, neuropsychiatric disorders, mild dysmorphic features, and hyperparathyroidism and other variable features. Most 17q12 deletions (approximately 75%) are de novo. This deletion is enriched in the clinical population. Additional relevant literature is summarized below: Case-Control Studies: PMID: 25217958 Coe et al. (2014) performed a large-scale case-control comparison study of the relative prevalence of CNVs in children with developmental delay/intellectual disability, multiple congenital anomalies, and other developmental phenotypes compared to controls. Deletions of the 17q12 region were observed in 20/29,085 cases versus 2/19,584 controls (p= 0.00145; LR: 6.73, 95% CI: 1.93-31.6), demonstrating enrichment of this deletion in the clinical population. See also Cooper et al. (2011) PMID 21841781 which used an overlapping (older) dataset. PMID: 23258348 Rosenfeld et al. (2013) calculated recurrent CNV penetrance estimates and de novo occurrence frequencies using a database of >48,000 patients referred for clinical genomic microarray testing compared to 22,246 controls. Penetrance of the 17q12 deletion was estimated to be 34.4% (95% CI: 13.7-70.0). This CNV was de novo in 5/9 (55.6%) clinical cases.

Triplosensitivity (TS) Score Details

TS Score:
3
TS Evidence Strength:
Sufficient Evidence for Triplosensitivity (Disclaimer)
TS Disease:
  • chromosome 17q12 duplication syndrome Monarch
TS Published Evidence:
  • PUBMED: 26925472
    Mefford. GeneReviews article.
  • PUBMED: 30134084
    Kamath et al. (2017) described a three-generation family with 5 affected carriers of the recurrent 17q12 duplication. The proband was identified through routine clinical microarray testing and additional family members were tested by FISH. Clinical findings were variable amongst family members, but common phenotypes included renal problems, diabetes mellitus, learning difficulties, epilepsy, and neuropsychiatric disorders. The authors also reviewed and summarized the peer-reviewed literature as well as findings of over 100 patients with similar duplications in the DECIPHER clinical database.
  • PUBMED: 27409573
    Rasmussen et al. (2016) described a large Danish cohort of 26 total 17q12 duplication carriers from 13 families with a proband (index patient) identified through routine clinical microarray testing and family member studied by array or targeted molecular method. The most prevalent clinical findings across index patients were learning disabilities in 7/8 (88%), motor delays in 8/11 (73%), language delay in 7/10 (70%), and neurological or psychiatric problems in 6/13 (46%). Additional variable findings included structural brain anomalies in 2/9 (22%), kidney abnormalities in 2/8 (25%), eye abnormalities in 4/13 (31%) and joint laxity in 3/13 (23%). Three index patients had an additional finding by array and some were patients with variable findings. Non-index carriers had lower frequencies of assessment and presence of all phenotypes but most prevalent included learning disabilities in 4/12 (33%) and language delay in 2/11 (18%). Of the individuals for whom inheritance information was available, the duplication was inherited in 15/16 families and de novo in one. A review of clinical findings for 92 previously reported patients from the literature was also provided.
  • PUBMED: 26420380
    Mitchell et al. (2015) described clinical features of 30 unrelated patients and 2 affected siblings with 17q12 duplications, identified through routine clinical, and in some cases, research microarray testing. The most prevalent clinical findings across duplication carriers were developmental delays/intellectual disability (including speech delays), an inconsistent pattern of dysmorphic features, microcephaly, and seizures. Other features reported in a subset of patients included behavioral and psychiatric disorders, growth delays, and other anomalies. The duplication was inherited in 19/21 cases and de novo in 2/21 cases. Of the 14 parents for whom phenotypic information was available and the 17q12 duplication was the only finding on microarray testing, 8 were reported to be clinically affected. Features reported in these parents included learning disabilities, microcephaly, and seizures.
TS Evidence Comments:
Duplication of 17q12 including HNF1B is associated with highly variable clinical phenotypes ranging from apparently unaffected to expression of a variety of clinical features that may include hypotonia, microcephaly, developmental delay/intellectual disability (including speech delay), autism, schizophrenia, and behavioral difficulties. Additional variable findings may include structural brain abnormalities, seizures, craniofacial dysmorphism, esophageal atresia, short stature, genital, cardiac, renal, and ocular anomalies. Studies of the general population have shown lower cognitive function test scores among 17q12 duplication carriers as compared to non-carriers. This difference has been reported to be significant, but with a mild effect size (subclinical), consistent with the duplication being a susceptibility locus for neurodevelopmental phenotypes. Variable expressivity and incomplete penetrance for 17q12 duplications have been demonstrated. The majority of 17q12 duplications are inherited, sometimes from a mildly affected or unaffected parent. Case-control comparison studies have shown enrichment of this duplication in clinical populations. Therefore, the triplosensitivity score is 3. Additional literature is summarized below: Case-Control Studies: PMID: 25217958 Coe et al. (2014) performed a large-scale case-control comparison study of the relative prevalence of CNVs in children with developmental delay/intellectual disability, multiple congenital anomalies, and other developmental phenotypes compared to controls. Duplications of the 17q12 region were observed in 23/29,085 cases versus 3/19,584 controls (p= 0.00147; LR: 5.16, 95% CI: 1.80-17.50), demonstrating enrichment of this duplication in the clinical population. See also Cooper et al. (2011) PMID 21841781, which uses an overlapping (older) dataset. PMID: 23258348 Rosenfeld et al. (2013) calculated recurrent CNV penetrance estimates and de novo occurrence frequencies using a database of >48,000 patients referred for clinical genomic microarray testing compared to 22,246 controls. The penetrance of the 17q12 duplication was estimated to be 21.1% (95% CI: 10.6-39.5). This CNV was de novo in 2/9 (22.2%) clinical cases. General Population Carrier Studies: PMID: 30767844 Kendall et al. (2019) analyzed the effect of the 17q12 duplication on cognitive performance and general measures of functioning of 25 duplication carrier adults recruited from the UK Biobank cohort (a large, genotyped group from the general population) compared to non-carrier controls from the same population. Significant differences were observed for 4 of 11 total measurements (average effect size: -0.18), including 1 of 7 cognitive measures and 3 of 4 measures of general functioning. Penetrance for any clinical phenotype associated with this duplication was estimated to be 14% using a previously reported clinical cohort compared to the UK Biobank control database. PMID: 24352232 Stefansson et al (2014) evaluated cognitive and psychiatric functioning in 7 adults with 17q12 duplications recruited from a large, genotyped control population from Iceland compared to non-carrier controls from the same population. The duplication was associated with a lower general assessment of function score (GAF) (1.63 s.d., p= 0.00037). A lower verbal IQ (V IQ; 1.57 s.d., p= NA) and lower scores on letter fluency tests (LF; 1.2 s.d., p=0.051) were also measured, but did not have significant p-values when adjusted for IQ. Additional Cohort Studies: PMID: 25691423, 23307502, 19844256

Genomic View

Select assembly: (NC_000017.10) ()